NEWS
mcmcensemble 3.1.0.9000
mcmcensemble 3.1.0 (2024-03-20)
Minor improvements
- there is now a clearer error message when trying to use a single walker since
ensemble sampling is designed to work with multiple walkers (#6 by @Bisaloo,
based on a report from @adamkucharski).
mcmcensemble 3.0.0 (2021-04-28)
Major changes
- the arguments
lower.inits
and upper.inits
are deprecated in favour of
inits
which leave more flexibility to the user. Please read the detailed
blog post for more background about this change and how to migrate.
inits
can now be a data.frame
or a matrix
d.e.mcmc()
and s.m.mcmc()
are not exported any more. Please use the
wrapper MCMCEnsemble()
instead.
- there is a new vignette
(
vignette("diagnostic-pkgs", package = "mcmcensemble")
) presenting two
different options (coda and bayesplot) to plot and evaluate the MCMC chains
produced by mcmcensemble.
Bug fixes
- The chains now run fine even in the case where there is only one iteration
(i.e.,
max.iter %/% n.walkers == 1
)
- The error message when the coda package is absent and
coda = TRUE
now
correctly prompt the user to use coda = FALSE
if they do not wish to install
coda.
mcmcensemble 2.2.0 (2021-02-20)
Major changes
- it is now possible to use a named vector as first argument of the function
passed in
f
. This is useful if you do something like:
p.log.named <- function(x) {
B <- 0.03
return(-x["a"]^2/200 - 1/2*(x["b"]+B*x["a"]^2-100*B)^2)
}
- mcmcensemble now explicitly depends on R >= 3.5.0. This was already implicitly
the case since 2.1 because of the dependency on the progressr package.
- the ensemble sampling algorithm used by
MCMCEnsemble()
is now recorded in
an additional attribute (accessible via attr(res, "ensemble.sampler")
).
Other user-facing changes
- there is now an additional argument check ensuring that
lower.inits
and
upper.inits
have the same names
mcmcensemble 2.1 (2021-01-07)
Major changes
- the ensemble sampling can now be parallelised with the future framework. Check
the README for more information
Other user-facing changes
- very large log.p differences between chains do not cause them to be
stuck any more
- addition of a new vignette listing frequently asked questions (with their
answer)
Dev changes
- new test to make sure the chains converge as expected
- performance improvements
mcmcensemble 2.0 (2020-10-17)
Breaking changes
- The argument names and order in
d.e.mcmc()
and s.m.mcmc()
now match those
of MCMCEnsemble()
Other user-facing changes
- coda package is now only in
Suggests
, instead of being a hard dependency
Dev changes
- this package is now named mcmcensemble
- roxygen2 documentation now uses markdown syntax
- this package now has unit and regression tests
- various parts of the code have been optimized for speed