Package: spatialdataR
Title: Representation of Python's spatialdata in R
Depends: R (>= 4.6)
Version: 0.99.47
Description: R interface to Python/scverse's 'spatialdata' framework
        for unified spatial omics data handling. Adheres to OME-NGFF
        standards, providing lazy, on-disk representations for
        multiscale images and labels (ZarrArray), as well as points and
        shapes (DuckDB-backed tables). Includes handling of coordinate
        transformation systems and spatial utilities for cropping,
        masking, and querying. Integrates tabular annotations as
        'SingleCellExperiment's (via 'anndataR'), enabling
        interoperable spatial omics workflows across R and Python.
Authors@R: c(
	person("Helena L.", "Crowell", 
	    role=c("aut", "cre"),
	    email="helena@crowell.eu", 
	    comment=c(ORCID="0000-0002-4801-1767")),
    person("Artür", "Manukyan",
        role=c("aut"),
        email="artur-man@hotmail.com",
        comment=c(ORCID="0000-0002-0441-9517")),
    person("Hugo", "Gruson",
        role=c("aut"),
        email="hugo.gruson@embl.de",
        comment=c(ORCID="0000-0002-4094-1476")),
    person("Vince", "Carey",
        role=c("aut"),
        email="stvjc@channing.harvard.edu",
        comment=c(ORCID="0000-0003-4046-0063")))
Imports: anndataR (>= 1.1.3), BiocGenerics (>= 0.59.6), DBI,
        DelayedArray, dplyr, duckdb, duckspatial, graph, Matrix,
        methods, Rarr, RBGL, rlang, sf, stats, S4Vectors,
        SingleCellExperiment, SummarizedExperiment, SparseArray,
        ZarrArray
Suggests: BiocStyle, EBImage, knitr, Rgraphviz, testthat (>= 3.0.0)
biocViews: DataImport, DataRepresentation, Infrastructure,
        ImmunoOncology, GeneExpression, Transcriptomics, SingleCell,
        Spatial
License: Artistic-2.0
Encoding: UTF-8
VignetteBuilder: knitr
BugReports: https://github.com/HelenaLC/spatialdataR/issues
URL: https://helenalc.github.io/spatialdataR,
        https://github.com/HelenaLC/spatialdataR
Config/roxygen2/version: 8.1.1
Config/testthat/edition: 3
Config/pak/sysreqs: libabsl-dev libblosc-dev cmake libgdal-dev gdal-bin
        libgeos-dev libicu-dev libpng-dev libxml2-dev libzstd-dev
        libssl-dev libproj-dev python3 libsqlite3-dev libudunits2-dev
        xz-utils zlib1g-dev
Repository: https://bisaloo.r-universe.dev
Date/Publication: 2026-10-17 15:43:12 UTC
RemoteUrl: https://github.com/HelenaLC/spatialdataR
RemoteRef: HEAD
RemoteSha: ee2877bcfecbf90f67a3a873214e1379795d811f
NeedsCompilation: no
Packaged: 2026-10-17 17:24:56 UTC; root
Author: Helena L. Crowell [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-4801-1767>),
  Artür Manukyan [aut] (ORCID: <https://orcid.org/0000-0002-0441-9517>),
  Hugo Gruson [aut] (ORCID: <https://orcid.org/0000-0002-4094-1476>),
  Vince Carey [aut] (ORCID: <https://orcid.org/0000-0003-4046-0063>)
Maintainer: Helena L. Crowell <helena@crowell.eu>