Package: ZarrArray 1.1.0

Hervé Pagès

ZarrArray: Bring Zarr datasets in R as DelayedArray objects

The ZarrArray package leverages the Rarr package to bring Zarr datasets in R as DelayedArray objects. The main class in the package is the ZarrArray class. A ZarrArray object is an array-like object that represents a Zarr dataset in R. ZarrArray objects are DelayedArray derivatives and therefore support all operations (delayed or block-processed) supported by DelayedArray objects.

Authors:Hervé Pagès [aut, cre], Mike Smith [aut], Hugo Gruson [aut], Artür Manukyan [aut], Levi Waldron [fnd]

ZarrArray_1.1.0.tar.gz
ZarrArray_1.1.0.zip(r-4.7)ZarrArray_1.1.0.zip(r-4.6)ZarrArray_1.1.0.zip(r-4.5)
ZarrArray_1.1.0.tgz(r-4.6-any)ZarrArray_1.1.0.tgz(r-4.5-any)
ZarrArray_1.1.0.tar.gz(r-4.7-any)ZarrArray_1.1.0.tar.gz(r-4.6-any)
ZarrArray_1.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
ZarrArray/json (API)
NEWS

# Install 'ZarrArray' in R:
install.packages('ZarrArray', repos = c('https://bisaloo.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/bioconductor/zarrarray/issues

On BioConductor:ZarrArray-1.1.0(bioc 3.24)ZarrArray-1.0.0(bioc 3.23)

infrastructuredatarepresentationdataimportbioconductor-packagecore-packageu24ca289073

6.62 score 5 stars 4 packages 7 scripts 21 exports 39 dependencies

Last updated from:498be8cf80. Checks:2 NOTE, 2 OK, 5 ERROR. Indexed: no.

TargetResultTimeFilesSyslog
linux-devel-x86_64NOTE259
source / vignettesOK269
linux-release-x86_64NOTE280
macos-release-arm64ERROR135
macos-oldrel-arm64ERROR135
windows-develERROR225
windows-releaseERROR210
windows-oldrelERROR207
wasm-releaseOK125

Exports:chunkdimcoerceDelayedArrayextract_arrayget_writeZarrArray_auto_chunkdimget_writeZarrArray_auto_pathget_writeZarrArray_chunk_maxlenget_writeZarrArray_chunk_shapeget_writeZarrArray_dump_dirmatrixClasspathset_writeZarrArray_chunk_maxlenset_writeZarrArray_chunk_shapeset_writeZarrArray_dump_dirshowtypewrite_blockwriteZarrArrayZarrArrayZarrArraySeedZarrRealizationSink

Dependencies:abindaskpassbase64encBiocGenericsclicurlDelayedArraydigestgenericsgluegrumpyhttr2IRangesjsonlitelatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsopensslpaws.commonpaws.storageR.methodsS3R.ooR.utilsR6rappdirsRarrRcpprlangS4ArraysS4VectorsSparseArraysysvctrswithrxml2XVector

ZarrArray overview

Hervé Pagès

Rendered fromZarrArray_overview.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2026-04-04
Started: 2026-01-28

Readme and manuals

Help Manual

Help pageTopics
Write an array-like object to disk in Zarr formatchunkdim,ZarrRealizationSink-method class:ZarrRealizationSink coerce,ANY,ZarrArray-method coerce,DelayedArray,ZarrArray-method coerce,DelayedMatrix,ZarrMatrix-method coerce,ZarrRealizationSink,DelayedArray-method coerce,ZarrRealizationSink,ZarrArray-method coerce,ZarrRealizationSink,ZarrArraySeed-method type,ZarrRealizationSink-method writeZarrArray write_block,ZarrRealizationSink-method ZarrRealizationSink ZarrRealizationSink-class
Control writeZarrArray's automatic argument valuesget_writeZarrArray_auto_chunkdim get_writeZarrArray_auto_path get_writeZarrArray_chunk_maxlen get_writeZarrArray_chunk_shape get_writeZarrArray_dump_dir set_writeZarrArray_chunk_maxlen set_writeZarrArray_chunk_shape set_writeZarrArray_dump_dir writeZarrArray-auto-args writeZarrArray_auto_args
Zarr datasets as DelayedArray objectsclass:ZarrArray class:ZarrMatrix coerce,ZarrArray,ZarrMatrix-method coerce,ZarrMatrix,ZarrArray-method DelayedArray,ZarrArraySeed-method matrixClass,ZarrArray-method ZarrArray ZarrArray-class ZarrMatrix ZarrMatrix-class
ZarrArraySeed objectschunkdim,ZarrArraySeed-method class:ZarrArraySeed dim,ZarrArraySeed-method extract_array,ZarrArraySeed-method path,ZarrArraySeed-method show,ZarrArraySeed-method type,ZarrArraySeed-method ZarrArraySeed ZarrArraySeed-class