Package: fundiversity 1.1.1

Matthias Grenié

fundiversity: Easy Computation of Functional Diversity Indices

Computes six functional diversity indices. These are namely, Functional Divergence (FDiv), Function Evenness (FEve), Functional Richness (FRic), Functional Richness intersections (FRic_intersect), Functional Dispersion (FDis), and Rao's entropy (Q) (reviewed in Villéger et al. 2008 <doi:10.1890/07-1206.1>). Provides efficient, modular, and parallel functions to compute functional diversity indices (Grenié & Gruson 2023 <doi:10.1111/ecog.06585>).

Authors:Matthias Grenié [aut, cre], Hugo Gruson [aut]

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fundiversity.pdf |fundiversity.html
fundiversity/json (API)
NEWS

# Install 'fundiversity' in R:
install.packages('fundiversity', repos = c('https://bisaloo.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/funecology/fundiversity/issues

Datasets:
  • site_sp_birds - Site-species matrix of birds along a Tropical Gradient
  • site_sp_plants - Site-species matrix of plants along a Tropical Gradient
  • traits_birds - Functional Traits of Frugivorous Birds along a Tropical Gradient
  • traits_plants - Functional Traits of Fleshy-fruit plants along a Tropical Gradient

On CRAN:

biodiversitybiodiversity-indicatorsbiodiversity-informaticsfunctional-diversityfunctional-ecologyfunctional-traitfunctional-traitstraittrait-basedtraits

6 exports 28 stars 2.61 score 22 dependencies 368 downloads

Last updated 4 days agofrom:ee995de800

Exports:fd_fdisfd_fdivfd_fevefd_fricfd_fric_intersectfd_raoq

Dependencies:abindclustercodetoolsdigestfuturefuture.applygeometryglobalslatticelinproglistenvlpSolvemagicMASSMatrixmgcvnlmeparallellypermuteRcppRcppProgressvegan

Overview of how to use fundiversity

Rendered fromfundiversity.Rmdusingknitr::rmarkdownon Jul 15 2024.

Last update: 2024-04-03
Started: 2020-12-20

Parallelize Computation of Indices

Rendered fromfundiversity_1-parallel.Rmdusingknitr::rmarkdownon Jul 15 2024.

Last update: 2024-04-03
Started: 2022-11-08

Performance Benchmark with other packages

Rendered fromfundiversity_2-performance.Rmdusingknitr::rmarkdownon Jul 15 2024.

Last update: 2022-11-15
Started: 2022-11-08

Check Numerical Correctness of Indices

Rendered fromfundiversity_3-correctness.Rmdusingknitr::rmarkdownon Jul 15 2024.

Last update: 2022-12-19
Started: 2022-11-08

Design Principles for fundiversity

Rendered fromfundiversity_4-design-principles.Rmdusingknitr::rmarkdownon Jul 15 2024.

Last update: 2022-11-08
Started: 2022-11-08