Package: fundiversity 1.1.1
Matthias Grenié
fundiversity: Easy Computation of Functional Diversity Indices
Computes six functional diversity indices. These are namely, Functional Divergence (FDiv), Function Evenness (FEve), Functional Richness (FRic), Functional Richness intersections (FRic_intersect), Functional Dispersion (FDis), and Rao's entropy (Q) (reviewed in Villéger et al. 2008 <doi:10.1890/07-1206.1>). Provides efficient, modular, and parallel functions to compute functional diversity indices (Grenié & Gruson 2023 <doi:10.1111/ecog.06585>).
Authors:
fundiversity_1.1.1.tar.gz
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fundiversity_1.1.1.tgz(r-4.4-any)fundiversity_1.1.1.tgz(r-4.3-any)
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fundiversity_1.1.1.tgz(r-4.4-emscripten)fundiversity_1.1.1.tgz(r-4.3-emscripten)
fundiversity.pdf |fundiversity.html✨
fundiversity/json (API)
NEWS
| # Install 'fundiversity' in R: |
| install.packages('fundiversity', repos = c('https://bisaloo.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/funecology/fundiversity/issues
- site_sp_birds - Site-species matrix of birds along a Tropical Gradient
- site_sp_plants - Site-species matrix of plants along a Tropical Gradient
- traits_birds - Functional Traits of Frugivorous Birds along a Tropical Gradient
- traits_plants - Functional Traits of Fleshy-fruit plants along a Tropical Gradient
biodiversitybiodiversity-indicatorsbiodiversity-informaticsfunctional-diversityfunctional-ecologyfunctional-traitfunctional-traitstraittrait-basedtraits
Last updated 3 months agofrom:ee995de800. Checks:OK: 7. Indexed: no.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 13 2024 |
| R-4.5-win | OK | Oct 13 2024 |
| R-4.5-linux | OK | Oct 13 2024 |
| R-4.4-win | OK | Oct 13 2024 |
| R-4.4-mac | OK | Oct 13 2024 |
| R-4.3-win | OK | Oct 13 2024 |
| R-4.3-mac | OK | Oct 13 2024 |
Exports:fd_fdisfd_fdivfd_fevefd_fricfd_fric_intersectfd_raoq
Dependencies:abindclustercodetoolsdigestfuturefuture.applygeometryglobalslatticelinproglistenvlpSolvemagicMASSMatrixmgcvnlmeparallellypermuteRcppRcppProgressvegan
Overview of how to use fundiversity
Rendered fromfundiversity.Rmdusingknitr::rmarkdownon Oct 13 2024.Last update: 2024-04-03
Started: 2020-12-20
Parallelize Computation of Indices
Rendered fromfundiversity_1-parallel.Rmdusingknitr::rmarkdownon Oct 13 2024.Last update: 2024-04-03
Started: 2022-11-08
Performance Benchmark with other packages
Rendered fromfundiversity_2-performance.Rmdusingknitr::rmarkdownon Oct 13 2024.Last update: 2022-11-15
Started: 2022-11-08
Check Numerical Correctness of Indices
Rendered fromfundiversity_3-correctness.Rmdusingknitr::rmarkdownon Oct 13 2024.Last update: 2022-12-19
Started: 2022-11-08
Design Principles for fundiversity
Rendered fromfundiversity_4-design-principles.Rmdusingknitr::rmarkdownon Oct 13 2024.Last update: 2022-11-08
Started: 2022-11-08
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Compute Functional Dispersion (FDis) | fd_fdis |
| Compute Functional Divergence (FDiv) | fd_fdiv |
| Compute Functional Evenness (FEve) | fd_feve |
| Compute Functional Richness (FRic) | fd_fric |
| Intersection between convex hulls of pairs of sites | fd_fric_intersect |
| Compute Rao's entropy index (Rao's Q) | fd_raoq |
| Options for 'fundiversity' | fundiversity-options |
| Site-species matrix of birds along a Tropical Gradient | site_sp_birds |
| Site-species matrix of plants along a Tropical Gradient | site_sp_plants |
| Functional Traits of Frugivorous Birds along a Tropical Gradient | traits_birds |
| Functional Traits of Fleshy-fruit plants along a Tropical Gradient | traits_plants |
