Package: lightr 1.7.1.9000

lightr: Read Spectrometric Data and Metadata

Parse various reflectance/transmittance/absorbance spectra file formats to extract spectral data and metadata, as described in Gruson, White & Maia (2019) <doi:10.21105/joss.01857>. Among other formats, it can import files from 'Avantes' <https://www.avantes.com/>, 'CRAIC' <https://www.microspectra.com/>, and 'OceanInsight' (formerly 'OceanOptics') <https://www.oceaninsight.com/> brands.

Authors:Hugo Gruson [cre, aut, cph], Rafael Maia [aut, cph], Thomas White [aut, cph], Kotya Karapetyan [ctb, cph]

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lightr.pdf |lightr.html✨
lightr/json (API)
NEWS

# Install 'lightr' in R:
install.packages('lightr', repos = c('https://bisaloo.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/ropensci/lightr/issues

On CRAN:

file-importreproducibilityreproducible-researchreproducible-sciencespectral-dataspectroscopy

6.93 score 13 stars 2 packages 12 scripts 848 downloads 17 exports 11 dependencies

Last updated 5 months agofrom:ff286dc09c. Checks:OK: 7. Indexed: no.

TargetResultDate
Doc / VignettesOKNov 08 2024
R-4.5-winOKNov 08 2024
R-4.5-linuxOKNov 08 2024
R-4.4-winOKNov 08 2024
R-4.4-macOKNov 08 2024
R-4.3-winOKNov 08 2024
R-4.3-macOKNov 08 2024

Exports:lr_convert_tocsvlr_get_metadatalr_get_speclr_parse_abslr_parse_genericlr_parse_irr8lr_parse_jazlr_parse_jazirradlr_parse_jdxlr_parse_procspeclr_parse_raw8lr_parse_rfl8lr_parse_rohlr_parse_spclr_parse_trmlr_parse_trtlr_parse_ttt

Dependencies:clicodetoolsdigestfuturefuture.applyglobalslistenvparallellyprogressrrlangxml2

Batch import with lr_get_spec() and lr_get_metadata()

Hugo Gruson

Rendered frombatch_import.Rmdusingknitr::rmarkdownon Nov 08 2024.

Last update: 2022-11-05
Started: 2018-11-23

Real life example

Hugo Gruson

Rendered fromtrue_example.Rmdusingknitr::rmarkdownon Nov 08 2024.

Last update: 2022-11-05
Started: 2019-09-02

Renormalise spectral data with a custom reference

Hugo Gruson

Rendered fromrenormalise.Rmdusingknitr::rmarkdownon Nov 08 2024.

Last update: 2024-07-11
Started: 2018-12-13