Package: linelist 1.1.4.9000
linelist: Tagging and Validating Epidemiological Data
Provides tools to help storing and handling case line list data. The 'linelist' class adds a tagging system to classical 'data.frame' objects to identify key epidemiological data such as dates of symptom onset, epidemiological case definition, age, gender or disease outcome. Once tagged, these variables can be seamlessly used in downstream analyses, making data pipelines more robust and reliable.
Authors:
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linelist.pdf |linelist.html✨
linelist/json (API)
NEWS
| # Install 'linelist' in R: |
| install.packages('linelist', repos = c('https://bisaloo.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/epiverse-trace/linelist/issues
Pkgdown site:https://epiverse-trace.github.io
datadata-structuresepidemiologyepiverseoutbreakssdg-3structured-data
Last updated 3 months agofrom:03c9c66f80. Checks:9 OK. Indexed: no.
| Target | Result | Latest binary |
|---|---|---|
| Doc / Vignettes | OK | Mar 10 2025 |
| R-4.5-win | OK | Mar 10 2025 |
| R-4.5-mac | OK | Mar 10 2025 |
| R-4.5-linux | OK | Mar 10 2025 |
| R-4.4-win | OK | Mar 10 2025 |
| R-4.4-mac | OK | Mar 10 2025 |
| R-4.4-linux | OK | Mar 10 2025 |
| R-4.3-win | OK | Mar 10 2025 |
| R-4.3-mac | OK | Mar 10 2025 |
Exports:get_lost_tags_actionhas_taglost_tags_actionmake_linelistset_tagstagstags_defaultstags_dftags_namestags_typesvalidate_linelistvalidate_tagsvalidate_types
Dependencies:backportscheckmatecligluelifecyclerlangtidyselectvctrswithr
An introduction to linelist
Rendered fromlinelist.Rmdusingknitr::rmarkdownon Mar 10 2025.Last update: 2024-07-04
Started: 2022-09-06
Compatibility with dplyr
Rendered fromcompat-dplyr.Rmdusingknitr::rmarkdownon Mar 10 2025.Last update: 2024-07-10
Started: 2023-06-19
Design Principles for linelist
Rendered fromdesign-principles.Rmdusingknitr::rmarkdownon Mar 10 2025.Last update: 2024-07-04
Started: 2024-02-28
Software permissions and regulations
Rendered fromsoftware-permissions.Rmdusingknitr::rmarkdownon Mar 10 2025.Last update: 2024-03-19
Started: 2024-03-19
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Subsetting of linelist objects | $<-.linelist sub_linelist [.linelist [<-.linelist [[<-.linelist |
| A selector function to use in 'tidyverse' functions | has_tag |
| Check and set behaviour for lost tags | get_lost_tags_action lost_tags_action |
| Create a linelist from a data.frame | make_linelist |
| Rename columns of a linelist | names<-.linelist |
| Printing method for linelist objects | print.linelist |
| Changes tags of a linelist object | set_tags |
| Get the list of tags in a linelist | tags |
| Generate default tags for a linelist | tags_defaults |
| Extract a data.frame of all tagged variables | tags_df |
| Get the list of tag names used in linelist | tags_names |
| List acceptable variable types for tags | tags_types |
| Checks the content of a linelist object | validate_linelist |
| Checks the tags of a linelist object | validate_tags |
| Check tagged variables are the right class | validate_types |
